Just came across a useful site listing second-hand markets for kids' stuff in Munich so thought I'd post a link here:
http://www.kinderbasar-muenchen.de
I know this isn't totally complete, because the Müttertreff in my neighborhood (Moosach--near the OEZ) has a bunch of second-hand markets that aren't listed -- next one is for clothes on February 18. Here's a link to their site:
Müttertreff Moosach Second Hand
If other people know of more second-hand markets that aren't listed on these sites, it would be great to post information here.